Package: metapr2 2.1.1

Daniel Vaulot

metapr2: Eukaryotic 18S rRNA metabarcode database

Provides an interface to the metaPR2 database (current version = 1.0) which contains eukaryotic 18S rRNA metabarcodes. Many options for selecting samples are provided. Data can be displayed as maps, barplots, treemaps. Data can be searched and downloaded. See https://pr2-database.org for more information.

Authors:Daniel Vaulot [aut, cre]

metapr2_2.1.1.tar.gz
metapr2_2.1.1.zip(r-4.5)metapr2_2.1.1.zip(r-4.4)metapr2_2.1.1.zip(r-4.3)
metapr2_2.1.1.tgz(r-4.4-any)metapr2_2.1.1.tgz(r-4.3-any)
metapr2_2.1.1.tar.gz(r-4.5-noble)metapr2_2.1.1.tar.gz(r-4.4-noble)
metapr2_2.1.1.tgz(r-4.4-emscripten)metapr2_2.1.1.tgz(r-4.3-emscripten)
metapr2.pdf |metapr2.html✨
metapr2/json (API)
NEWS

# Install 'metapr2' in R:
install.packages('metapr2', repos = c('https://pr2database.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/pr2database/metapr2-shiny/issues

On CRAN:

18s-rrnametabarcodingshiny-apps

2.18 score 3 stars 1 exports 185 dependencies

Last updated 9 months agofrom:90d13e3a11. Checks:OK: 1 WARNING: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 21 2024
R-4.5-winWARNINGNov 21 2024
R-4.5-linuxWARNINGNov 21 2024
R-4.4-winWARNINGNov 21 2024
R-4.4-macWARNINGNov 21 2024
R-4.3-winWARNINGNov 21 2024
R-4.3-macWARNINGNov 21 2024

Exports:run_app

Dependencies:ade4anytimeapeaskpassbackportsbase64encBHbillboarderBiobaseBiocGenericsbiomformatBiostringsbitbit64blasterblobbslibcachemcallrcellrangercheckmateclicliprclustercodetoolscolorspacecommonmarkcpp11crayoncrosstalkcurldata.tableDBIdescdigestdplyrDTevaluatefansifarverfastmapfontawesomeforcatsforeachforeignfsgenericsGenomeInfoDbGenomeInfoDbDataggfittextggforceggplot2gluegridExtragridtextgtablehavenhighrhmshtmltoolshtmlwidgetshttpuvhttrigraphIRangesisobanditeratorsjpegjquerylibjsonliteknitrlabelinglaterlatticelazyevalleafletleaflet.minichartsleaflet.providerslifecyclelobstrlubridatemagrittrmarkdownMASSMatrixmemoisemgcvmimemulttestmunsellnanotimenlmeopensslpatchworkpermutephyloseqpillarpixmappkgbuildpkgconfigpkgloadplogrplotlyplyrpngpolyclipprettyunitsprocessxprogresspromisespryrpspurrrqsR.methodsS3R.ooR.utilsR6RApiSerializerappdirsrasterRColorBrewerRcppRcppArmadilloRcppCCTZRcppDateRcppEigenRcppParallelreadrreadxlrematchreshape2rhdf5rhdf5filtersRhdf5libriorlangrmarkdownrprojrootRSQLiteS4VectorssassscalesscryptshadesshinyshinycssloadersshinydisconnectshinylogsshinymanagershinyvalidateshinyWidgetssourcetoolsspstringfishstringistringrsurvivalsyssystemfontsterratibbletidyrtidyselecttimechangetinytextreemapifytweenrtzdbUCSC.utilsutf8vctrsveganviridisviridisLitevroomwithrwritexlxfunxml2xtableXVectoryamlzlibbioczoo